Report for Sequence Feature Glyma18g07090
Feature Type: gene_model
Chromosome: Gm18
Start: 5801761
stop: 5804794
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g07090
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G47160 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:17360238-17361879 REVERSE LENGTH=245
SoyBase E_val: 3.00E-117 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1039
KOG
Predicted E3 ubiquitin ligase
JGI ISS
PTHR15067 Panther
FAMILY NOT NAMED
JGI ISS
PTHR15067:SF7 Panther
ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI
JGI ISS
UniRef100_C6T3M9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T3M9_SOYBN
SoyBase E_val: 6.00E-179 ISS
UniRef100_Q9LLM2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MTD2 n=1 Tax=Medicago truncatula RepID=Q9LLM2_MEDTR
SoyBase E_val: 4.00E-157 ISS
Expression Patterns of Glyma18g07090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma18g07090 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g063500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g07090
Transcripts of Glyma18g07090
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g07090.2 sequence type=transcript gene model=Glyma18g07090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTCGAACATGGTAACCCACTTGTATCAATACCATTAGCAAAACCAAGAGTAGTTAGAACCGAAAGGGTAATAGTGTCACTGTGAGTGTCATATACAAATCATATCATATGATATATATTGGTATAATATCAACACCATAGGCTTTGTGGGATTATTCTTAGTTGCACGCAGAAAAATTTTCTGGGAAAATATCTTGGTATGGGAAAGGGATCTTTTCAGGACTCTGTTAAAGCTCTGGAAGCTGACATTCAGTATGCTAATACCCTTGGTAGAGTTGGACTTTGAAGCTGAGAATTTGTTTAAAGAAGATGTTGATGAACTGCACCTGTGAATTTGCATGACACTCAGTTGGAAAATTGAATTAGATAACACTTTTCAATATCCAAAAACTTCATTGATATGTTTATGATGGAGTCTTTCATACTAATTCTTTAAGCAGAGTTTAGCACTTTTCTCATGTGAGTGAGATTGTATGCTTTCTTTTCGCCTCTTTGTTAGGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGAAGGAATTGCCTACAGATTTTTGGAAAATAGTGTGTATGTTTCACTTTACTTGTACATGCATTTTAGACCATAATTTAATTGTGTATATATTTAACTGGCTTTTTTCCAATCGGCTTCAAGTTGGTGATTTATTTCTAACCCAAAGTTCCAATATTCTGCTGTCCCCTATCTATCTACCATACAGTGATTTGCTTATTCACTTATAATAATAATAATAAGGCAAAC
Coding sequences of Glyma18g07090
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g07090.1 sequence type=CDS gene model=Glyma18g07090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAAGGGATCTTTTCAGGACTCTGTTAAAGCTCTGGAAGCTGACATTCAGTATGCTAATACCCTGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGA
>Glyma18g07090.2 sequence type=CDS gene model=Glyma18g07090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTTCTTTTCGCCTCTTTGTTAGGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGA
Predicted protein sequences of Glyma18g07090
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g07090.1 sequence type=predicted peptide gene model=Glyma18g07090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGKGSFQDSVKALEADIQYANTLALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSIIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRTNSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPLLR*
>Glyma18g07090.2 sequence type=predicted peptide gene model=Glyma18g07090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLSFRLFVRALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSIIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRTNSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPLLR*