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Report for Sequence Feature Glyma18g07090

Feature Type:gene_model
Chromosome:Gm18
Start:5801761
stop:5804794
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47160AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:17360238-17361879 REVERSE LENGTH=245 SoyBaseE_val: 3.00E-117ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1039 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR15067Panther FAMILY NOT NAMED JGI ISS
PTHR15067:SF7Panther ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI JGI ISS
UniRef100_C6T3M9UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T3M9_SOYBN SoyBaseE_val: 6.00E-179ISS
UniRef100_Q9LLM2UniRef Annotation by Michelle Graham. Most informative UniRef hit: MTD2 n=1 Tax=Medicago truncatula RepID=Q9LLM2_MEDTR SoyBaseE_val: 4.00E-157ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g063500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g07090.2   sequence type=transcript   gene model=Glyma18g07090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCGAACATGGTAACCCACTTGTATCAATACCATTAGCAAAACCAAGAGTAGTTAGAACCGAAAGGGTAATAGTGTCACTGTGAGTGTCATATACAAATCATATCATATGATATATATTGGTATAATATCAACACCATAGGCTTTGTGGGATTATTCTTAGTTGCACGCAGAAAAATTTTCTGGGAAAATATCTTGGTATGGGAAAGGGATCTTTTCAGGACTCTGTTAAAGCTCTGGAAGCTGACATTCAGTATGCTAATACCCTTGGTAGAGTTGGACTTTGAAGCTGAGAATTTGTTTAAAGAAGATGTTGATGAACTGCACCTGTGAATTTGCATGACACTCAGTTGGAAAATTGAATTAGATAACACTTTTCAATATCCAAAAACTTCATTGATATGTTTATGATGGAGTCTTTCATACTAATTCTTTAAGCAGAGTTTAGCACTTTTCTCATGTGAGTGAGATTGTATGCTTTCTTTTCGCCTCTTTGTTAGGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGAAGGAATTGCCTACAGATTTTTGGAAAATAGTGTGTATGTTTCACTTTACTTGTACATGCATTTTAGACCATAATTTAATTGTGTATATATTTAACTGGCTTTTTTCCAATCGGCTTCAAGTTGGTGATTTATTTCTAACCCAAAGTTCCAATATTCTGCTGTCCCCTATCTATCTACCATACAGTGATTTGCTTATTCACTTATAATAATAATAATAAGGCAAAC

>Glyma18g07090.1   sequence type=CDS   gene model=Glyma18g07090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAGGGATCTTTTCAGGACTCTGTTAAAGCTCTGGAAGCTGACATTCAGTATGCTAATACCCTGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGA

>Glyma18g07090.2   sequence type=CDS   gene model=Glyma18g07090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTCTTTTCGCCTCTTTGTTAGGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGA

>Glyma18g07090.1   sequence type=predicted peptide   gene model=Glyma18g07090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKGSFQDSVKALEADIQYANTLALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSIIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRTNSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPLLR*

>Glyma18g07090.2   sequence type=predicted peptide   gene model=Glyma18g07090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSFRLFVRALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSIIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRTNSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPLLR*







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